BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB034A09SP1|AL429842
(826 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig94 861 0.0
3x_Contig148 282 1e-75
>3x_Contig94
Length = 1183
Score = 861 bits (428), Expect = 0.0
Identities = 481/508 (94%)
Strand = Plus / Plus
Query: 319 tggcctagcccaacctaacttacataawatgtacaaaawawaccckgtctcttatctaag 378
||||||||||||||||||||||||||| ||||||| || | || | ||||||||||||||
Sbjct: 1 tggcctagcccaacctaacttacataatatgtacataatatactctgtctcttatctaag 60
Query: 379 tccccctttccccccccatgacttgcggacgttagcccaattgkgcacaaaggctactac 438
|||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 61 tccctctttcctcccccatgacttgcggacgttagcccaattgtgcacaaaggctactac 120
Query: 439 gatcggrggacaaccctagagkagggaaacttctggggttctggttggktaaaattagtt 498
|||||| ||||||||||||| ||| |||||||||| ||||||||||| ||| |||||||
Sbjct: 121 gatcggatgacaaccctagagtaggtaaacttctggtgttctggttggttaatattagtt 180
Query: 499 tggragggacttgggcggtacccccagctagggggaattatatggggctaacaatcgaag 558
||| ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 181 tggaaggtacttgggctgtacccccagctagggtgaattatatggggctaacaatcgaag 240
Query: 559 atcggccgtcaacttattctctgggtgtgcaagaatcatcaaatcacgtgatatatgtwt 618
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 241 atcgtccgtcaacttattctctgggtgtgcaagaatcatcaaatcacgtgatatatgtat 300
Query: 619 ttttacccatgaaagaaacgttcgaataatcatccgattacatgaaaggtaaataccaca 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttttacccatgaaagaaacgttcgaataatcatccgattacatgaaaggtaaataccaca 360
Query: 679 ggggcctcaggcaattgctcttgtgtaattttttgacaccccaagggkaggatactgtaa 738
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 361 ggagcctcaggcaattgctcttgtgtaattttttgacaccccaagggtaggatactgtaa 420
Query: 739 tcaaccctacccctgttgatatmataawgttagtcttggactctgtcatgccgcatgctt 798
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 421 tcaaccctacccctgttgatatcataatgttagtcttggactctgtcatgccgcatgctt 480
Query: 799 tgaagagcatamggacaatcaatcggaa 826
||||||||||| ||||||||||||||||
Sbjct: 481 tgaagagcatacggacaatcaatcggaa 508
>3x_Contig148
Length = 1177
Score = 282 bits (140), Expect = 1e-75
Identities = 165/172 (95%), Gaps = 1/172 (0%)
Strand = Plus / Plus
Query: 1 cgcactcacaatctttctttctatctctctaacggatcctagctaatagcccgcctctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 cgcactcacaatctttctttctatctctctaacggatcctagctaatagcccgcctctgt 1064
Query: 61 tattgtttctgtttctgtttctgtctctgttttatctcattccttcagtgaaaaaaaaaa 120
||| | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 1065 tataggttctgtttctgtttctgtctctgttctatctcattccttcagtg-gaaaaaaaa 1123
Query: 121 aaaaaaaaaacagtaccgtcctttattgtaatttcagttccaaattgccagc 172
|||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1124 aaaaaaaatacagtaccgttctttattgtaatttcagttccaaattgccagc 1175
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.714 1.32
Gapped
Lambda K H
1.39 0.714 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,364
Number of Sequences: 1807
Number of extensions: 19364
Number of successful extensions: 5475
Number of sequences better than 1.0e-20: 2
length of query: 826
length of database: 10,358,551
effective HSP length: 16
effective length of query: 810
effective length of database: 10,329,639
effective search space: 8367007590
effective search space used: 8367007590
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.6 bits)
S2: 50 (101.0 bits)